CORE FACILITY CELLULAR IMAGING
CEITEC Masaryk University
Kamenice 753/5
625 00 Brno CZ
cellim_support(at)ceitec.muni.cz
+420 54949 7085
+420 54949 6133
@Ceitec_CellimCF
ceitec_cellimcf
Cellular Imaging Core Facility
Galibier workstation
Galibier image processing workstation
Galibier is a local CELLIM image processing workstation for microscopy image analysis, visualisation and interactive work with image datasets. It is kept as a powerful on-site workstation and as a spare option when the Odeon image processing server is fully booked.
Galibier is suitable for local data inspection, interactive image analysis, method development and backup image processing in the CELLIM facility.
Hardware | |
| Location | CEITEC MU, C2 -118a |
| CPU | Intel Xeon Gold 6134, 8 cores / 16 threads, 3.2 GHz |
| RAM | 192 GB |
| GPU | NVIDIA Quadro P6000, 24 GB VRAM, 3840 CUDA cores |
Software on Galibier | |
| Imaris | Older full version of Imaris for 3D/4D microscopy image visualisation and analysis. |
| ZEN Blue and ZEN Black | Older ZEN software versions for Zeiss image processing workflows. |
| CellProfiler | Automated and batch image analysis pipelines. |
| Fiji / ImageJ | Open-source image processing, plugin and macro workflows. |
| Cellpose | AI-based cell and nucleus segmentation. |
| Evident CellSens | Evident/Olympus microscopy image viewing, processing and analysis. |
| Other tools | Additional image processing and analysis tools are available on the workstation. Please contact CELLIM staff for project-specific advice. |
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