Pracovní stanice pro zpracování a analýzu obrazu
Image processing workstations
CELLIM provides dedicated computer resources for microscopy image processing, bioimage analysis, image visualisation and quantitative analysis of large multidimensional datasets. The main system is Odeon, a remote-access image processing server. Galibier is available as a local image analysis workstation and backup option when Odeon is fully booked.
CELLIM is part of the Euro-BioImaging network, which makes CELLIM imaging and bioimage analysis services accessible to users from around the world. Thanks to this open-access infrastructure and Odeon's remote access, international users can use CELLIM image processing resources without needing to be physically present at CEITEC.
Choose a resource | ||
Odeon | Galibier | Software |
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| Main remote-access Windows Server 2019 image processing server for large microscopy datasets, high-throughput bioimage analysis, Imaris 11, ZEN, CellProfiler, Fiji/ImageJ, Leica LAS X, LIGHTNING deconvolution and FLIM-related analysis. | Local CELLIM image processing workstation for interactive microscopy image analysis, data inspection, method development and backup processing when Odeon is fully booked. | Overview of commercial and open-source software available on CELLIM image processing systems, including Imaris, ZEN, CellProfiler, Fiji/ImageJ, LAS X, CellSens and Cellpose. |
| Open Odeon page | Open Galibier page | Open Software page |
Which system should I use?
| System | Best for | Access | Typical use |
| Odeon | Large datasets, high-throughput image processing and remote microscopy image analysis | Remote Desktop Protocol (RDP) from Windows, macOS or Linux; also available from CELLIM facility PCs | Imaris 11 analysis, Zeiss ZEN processing, CellProfiler batch workflows, Fiji/ImageJ, Leica LAS X processing |
| Galibier | Local image analysis workstation and backup option | Local workstation in the CELLIM facility | Interactive analysis, checking datasets, workflow development and spare workstation use |

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Cellular Imaging Core Facility


