Pracovní stanice pro zpracování a analýzu obrazu

Image processing workstations


CELLIM provides dedicated computer resources for microscopy image processing, bioimage analysis, image visualisation and quantitative analysis of large multidimensional datasets. The main system is Odeon, a remote-access image processing server. Galibier is available as a local image analysis workstation and backup option when Odeon is fully booked.

CELLIM is part of the Euro-BioImaging network, which makes CELLIM imaging and bioimage analysis services accessible to users from around the world. Thanks to this open-access infrastructure and Odeon's remote access, international users can use CELLIM image processing resources without needing to be physically present at CEITEC.


Choose a resource


Odeon


Galibier


Software





Main remote-access Windows Server 2019 image processing server for large microscopy datasets, high-throughput bioimage analysis, Imaris 11, ZEN, CellProfiler, Fiji/ImageJ, Leica LAS X, LIGHTNING deconvolution and FLIM-related analysis.
Local CELLIM image processing workstation for interactive microscopy image analysis, data inspection, method development and backup processing when Odeon is fully booked.
Overview of commercial and open-source software available on CELLIM image processing systems, including Imaris, ZEN, CellProfiler, Fiji/ImageJ, LAS X, CellSens and Cellpose.
Open Odeon pageOpen Galibier pageOpen Software page


Which system should I use?


SystemBest forAccessTypical use
OdeonLarge datasets, high-throughput image processing and remote microscopy image analysisRemote Desktop Protocol (RDP) from Windows, macOS or Linux; also available from CELLIM facility PCsImaris 11 analysis, Zeiss ZEN processing, CellProfiler batch workflows, Fiji/ImageJ, Leica LAS X processing
GalibierLocal image analysis workstation and backup optionLocal workstation in the CELLIM facilityInteractive analysis, checking datasets, workflow development and spare workstation use

Booking system  |  CELLIM contact form  |  Euro-BioImaging